﻿2026-01-05T01:33:08.7158371Z Current runner version: '2.330.0'
2026-01-05T01:33:08.7180894Z ##[group]Runner Image Provisioner
2026-01-05T01:33:08.7181609Z Hosted Compute Agent
2026-01-05T01:33:08.7182048Z Version: 20251202.455
2026-01-05T01:33:08.7182621Z Commit: 6c10caca4910e198df60de23adf20ad317c474e3
2026-01-05T01:33:08.7183212Z Build Date: 2025-12-02T15:56:59Z
2026-01-05T01:33:08.7183773Z Worker ID: {fee56b0b-e9dc-4dee-9079-680e5ff9ad25}
2026-01-05T01:33:08.7184386Z ##[endgroup]
2026-01-05T01:33:08.7184800Z ##[group]Operating System
2026-01-05T01:33:08.7185306Z Microsoft Windows Server 2019
2026-01-05T01:33:08.7185797Z 10.0.17763
2026-01-05T01:33:08.7186187Z Datacenter
2026-01-05T01:33:08.7186544Z ##[endgroup]
2026-01-05T01:33:08.7186961Z ##[group]Runner Image
2026-01-05T01:33:08.7187381Z Image: windows-2019
2026-01-05T01:33:08.7187807Z Version: 20250623.2.0
2026-01-05T01:33:08.7188980Z Included Software: https://github.com/actions/runner-images/blob/win19/20250623.2/images/windows/Windows2019-Readme.md
2026-01-05T01:33:08.7190366Z Image Release: https://github.com/actions/runner-images/releases/tag/win19%2F20250623.2
2026-01-05T01:33:08.7191175Z ##[endgroup]
2026-01-05T01:33:08.7193948Z ##[group]GITHUB_TOKEN Permissions
2026-01-05T01:33:08.7195752Z Actions: write
2026-01-05T01:33:08.7196240Z ArtifactMetadata: write
2026-01-05T01:33:08.7196690Z Attestations: write
2026-01-05T01:33:08.7197126Z Checks: write
2026-01-05T01:33:08.7197557Z Contents: write
2026-01-05T01:33:08.7197970Z Deployments: write
2026-01-05T01:33:08.7198402Z Discussions: write
2026-01-05T01:33:08.7198806Z Issues: write
2026-01-05T01:33:08.7199213Z Metadata: read
2026-01-05T01:33:08.7199578Z Models: read
2026-01-05T01:33:08.7199993Z Packages: write
2026-01-05T01:33:08.7200383Z Pages: write
2026-01-05T01:33:08.7200790Z PullRequests: write
2026-01-05T01:33:08.7201304Z RepositoryProjects: write
2026-01-05T01:33:08.7201757Z SecurityEvents: write
2026-01-05T01:33:08.7202188Z Statuses: write
2026-01-05T01:33:08.7202602Z ##[endgroup]
2026-01-05T01:33:08.7204527Z Secret source: Actions
2026-01-05T01:33:08.7205108Z Prepare workflow directory
2026-01-05T01:33:08.7512023Z Prepare all required actions
2026-01-05T01:33:08.7548255Z Getting action download info
2026-01-05T01:33:09.2467659Z Download action repository 'actions/checkout@v4' (SHA:34e114876b0b11c390a56381ad16ebd13914f8d5)
2026-01-05T01:33:09.8615415Z Download action repository 'actions/setup-python@v5' (SHA:a26af69be951a213d495a4c3e4e4022e16d87065)
2026-01-05T01:33:10.5004667Z Download action repository 'actions/download-artifact@v4' (SHA:d3f86a106a0bac45b974a628896c90dbdf5c8093)
2026-01-05T01:33:11.3158228Z Complete job name: Test wheels on windows-2019 with Python 3.11
2026-01-05T01:33:11.4581016Z ##[group]Run actions/checkout@v4
2026-01-05T01:33:11.4581750Z with:
2026-01-05T01:33:11.4581989Z   repository: worm-portal/aqequil
2026-01-05T01:33:11.4582451Z   token: ***
2026-01-05T01:33:11.4582654Z   ssh-strict: true
2026-01-05T01:33:11.4582865Z   ssh-user: git
2026-01-05T01:33:11.4583103Z   persist-credentials: true
2026-01-05T01:33:11.4583337Z   clean: true
2026-01-05T01:33:11.4583556Z   sparse-checkout-cone-mode: true
2026-01-05T01:33:11.4583813Z   fetch-depth: 1
2026-01-05T01:33:11.4584013Z   fetch-tags: false
2026-01-05T01:33:11.4584235Z   show-progress: true
2026-01-05T01:33:11.4584438Z   lfs: false
2026-01-05T01:33:11.4584621Z   submodules: false
2026-01-05T01:33:11.4584837Z   set-safe-directory: true
2026-01-05T01:33:11.4585263Z ##[endgroup]
2026-01-05T01:33:11.6166675Z Syncing repository: worm-portal/aqequil
2026-01-05T01:33:11.6168137Z ##[group]Getting Git version info
2026-01-05T01:33:11.6168494Z Working directory is 'D:\a\aqequil\aqequil'
2026-01-05T01:33:11.7137530Z [command]"C:\Program Files\Git\bin\git.exe" version
2026-01-05T01:33:12.0782902Z git version 2.50.0.windows.1
2026-01-05T01:33:12.0834615Z ##[endgroup]
2026-01-05T01:33:12.0853413Z Temporarily overriding HOME='D:\a\_temp\978fc43d-28da-4c0e-b7d6-23975f68dd9a' before making global git config changes
2026-01-05T01:33:12.0856695Z Adding repository directory to the temporary git global config as a safe directory
2026-01-05T01:33:12.0868422Z [command]"C:\Program Files\Git\bin\git.exe" config --global --add safe.directory D:\a\aqequil\aqequil
2026-01-05T01:33:12.1359952Z Deleting the contents of 'D:\a\aqequil\aqequil'
2026-01-05T01:33:12.1365443Z ##[group]Initializing the repository
2026-01-05T01:33:12.1379577Z [command]"C:\Program Files\Git\bin\git.exe" init D:\a\aqequil\aqequil
2026-01-05T01:33:12.2142190Z Initialized empty Git repository in D:/a/aqequil/aqequil/.git/
2026-01-05T01:33:12.2190924Z [command]"C:\Program Files\Git\bin\git.exe" remote add origin https://github.com/worm-portal/aqequil
2026-01-05T01:33:12.2694483Z ##[endgroup]
2026-01-05T01:33:12.2694988Z ##[group]Disabling automatic garbage collection
2026-01-05T01:33:12.2717800Z [command]"C:\Program Files\Git\bin\git.exe" config --local gc.auto 0
2026-01-05T01:33:12.2980038Z ##[endgroup]
2026-01-05T01:33:12.2980797Z ##[group]Setting up auth
2026-01-05T01:33:12.2998041Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp core\.sshCommand
2026-01-05T01:33:12.3261787Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :\""
2026-01-05T01:33:13.5877289Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2026-01-05T01:33:13.6123268Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :\""
2026-01-05T01:33:14.0295734Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp ^includeIf\.gitdir:
2026-01-05T01:33:14.0543366Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "git config --local --show-origin --name-only --get-regexp remote.origin.url"
2026-01-05T01:33:14.4899642Z [command]"C:\Program Files\Git\bin\git.exe" config --local http.https://github.com/.extraheader "AUTHORIZATION: basic ***"
2026-01-05T01:33:14.5148036Z ##[endgroup]
2026-01-05T01:33:14.5148528Z ##[group]Fetching the repository
2026-01-05T01:33:14.5165733Z [command]"C:\Program Files\Git\bin\git.exe" -c protocol.version=2 fetch --no-tags --prune --no-recurse-submodules --depth=1 origin +0fba8641708a9a29f5cf75d5e1aa5af56402a902:refs/tags/v1.0.1
2026-01-05T01:33:15.7023587Z From https://github.com/worm-portal/aqequil
2026-01-05T01:33:15.7026742Z  * [new ref]         0fba8641708a9a29f5cf75d5e1aa5af56402a902 -> v1.0.1
2026-01-05T01:33:15.7312803Z ##[endgroup]
2026-01-05T01:33:15.7313313Z ##[group]Determining the checkout info
2026-01-05T01:33:15.7315763Z ##[endgroup]
2026-01-05T01:33:15.7332596Z [command]"C:\Program Files\Git\bin\git.exe" sparse-checkout disable
2026-01-05T01:33:15.7735727Z [command]"C:\Program Files\Git\bin\git.exe" config --local --unset-all extensions.worktreeConfig
2026-01-05T01:33:15.7988203Z ##[group]Checking out the ref
2026-01-05T01:33:15.8000379Z [command]"C:\Program Files\Git\bin\git.exe" checkout --progress --force refs/tags/v1.0.1
2026-01-05T01:33:16.0898838Z Note: switching to 'refs/tags/v1.0.1'.
2026-01-05T01:33:16.0899307Z 
2026-01-05T01:33:16.0899677Z You are in 'detached HEAD' state. You can look around, make experimental
2026-01-05T01:33:16.0900401Z changes and commit them, and you can discard any commits you make in this
2026-01-05T01:33:16.0901207Z state without impacting any branches by switching back to a branch.
2026-01-05T01:33:16.0901685Z 
2026-01-05T01:33:16.0901970Z If you want to create a new branch to retain commits you create, you may
2026-01-05T01:33:16.0903021Z do so (now or later) by using -c with the switch command. Example:
2026-01-05T01:33:16.0903468Z 
2026-01-05T01:33:16.0903649Z   git switch -c <new-branch-name>
2026-01-05T01:33:16.0905075Z 
2026-01-05T01:33:16.0905273Z Or undo this operation with:
2026-01-05T01:33:16.0905660Z 
2026-01-05T01:33:16.0905838Z   git switch -
2026-01-05T01:33:16.0906091Z 
2026-01-05T01:33:16.0906576Z Turn off this advice by setting config variable advice.detachedHead to false
2026-01-05T01:33:16.0907340Z 
2026-01-05T01:33:16.0907835Z HEAD is now at 0fba864 Add automatic versioning from git tags using setuptools_scm
2026-01-05T01:33:16.0942416Z ##[endgroup]
2026-01-05T01:33:16.1321598Z [command]"C:\Program Files\Git\bin\git.exe" log -1 --format=%H
2026-01-05T01:33:16.1524085Z 0fba8641708a9a29f5cf75d5e1aa5af56402a902
2026-01-05T01:33:16.1883207Z ##[group]Run actions/setup-python@v5
2026-01-05T01:33:16.1883509Z with:
2026-01-05T01:33:16.1883666Z   python-version: 3.11
2026-01-05T01:33:16.1883863Z   check-latest: false
2026-01-05T01:33:16.1884156Z   token: ***
2026-01-05T01:33:16.1884324Z   update-environment: true
2026-01-05T01:33:16.1884526Z   allow-prereleases: false
2026-01-05T01:33:16.1884721Z   freethreaded: false
2026-01-05T01:33:16.1884889Z ##[endgroup]
2026-01-05T01:33:16.4064797Z ##[group]Installed versions
2026-01-05T01:33:16.4327183Z Successfully set up CPython (3.11.9)
2026-01-05T01:33:16.4328039Z ##[endgroup]
2026-01-05T01:33:16.4597318Z ##[group]Run actions/download-artifact@v4
2026-01-05T01:33:16.4597737Z with:
2026-01-05T01:33:16.4597957Z   name: wheels-windows-2019
2026-01-05T01:33:16.4598182Z   path: wheelhouse
2026-01-05T01:33:16.4598431Z   merge-multiple: false
2026-01-05T01:33:16.4598681Z   repository: worm-portal/aqequil
2026-01-05T01:33:16.4598931Z   run-id: 20702070857
2026-01-05T01:33:16.4599131Z env:
2026-01-05T01:33:16.4599407Z   pythonLocation: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:16.4599867Z   PKG_CONFIG_PATH: C:\hostedtoolcache\windows\Python\3.11.9\x64/lib/pkgconfig
2026-01-05T01:33:16.4600345Z   Python_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:16.4600761Z   Python2_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:16.4601191Z   Python3_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:16.4601531Z ##[endgroup]
2026-01-05T01:33:16.7200479Z Downloading single artifact
2026-01-05T01:33:17.0361426Z Preparing to download the following artifacts:
2026-01-05T01:33:17.0362314Z - wheels-windows-2019 (ID: 5019935684, Size: 23024769, Expected Digest: sha256:b79d51ee2f30d1247dff1e95897f46290a31dfe3822f377c914f152c5233a68a)
2026-01-05T01:33:17.2380090Z Redirecting to blob download url: https://productionresultssa18.blob.core.windows.net/actions-results/26a74c06-72e1-4403-8f14-91bf0d49fcbc/workflow-job-run-dc62d33d-f61e-5c66-b8b0-b0fb4e2697e9/artifacts/2d74564dac50ace46aa55f3b0736466cb259cb536408fda096bfbd335df3bf65.zip
2026-01-05T01:33:17.2382398Z Starting download of artifact to: D:\a\aqequil\aqequil\wheelhouse
2026-01-05T01:33:17.6089793Z (node:3012) [DEP0005] DeprecationWarning: Buffer() is deprecated due to security and usability issues. Please use the Buffer.alloc(), Buffer.allocUnsafe(), or Buffer.from() methods instead.
2026-01-05T01:33:17.6092555Z (Use `node --trace-deprecation ...` to show where the warning was created)
2026-01-05T01:33:18.9448470Z SHA256 digest of downloaded artifact is b79d51ee2f30d1247dff1e95897f46290a31dfe3822f377c914f152c5233a68a
2026-01-05T01:33:18.9449490Z Artifact download completed successfully.
2026-01-05T01:33:18.9449802Z Total of 1 artifact(s) downloaded
2026-01-05T01:33:18.9461817Z Download artifact has finished successfully
2026-01-05T01:33:18.9713389Z ##[group]Run PYVER=$(echo "3.11" | tr -d '.')
2026-01-05T01:33:18.9713801Z [36;1mPYVER=$(echo "3.11" | tr -d '.')[0m
2026-01-05T01:33:18.9714173Z [36;1mpython -m pip install wheelhouse/aqequil-*-cp${PYVER}-*.whl[0m
2026-01-05T01:33:18.9919000Z shell: C:\Program Files\Git\bin\bash.EXE --noprofile --norc -e -o pipefail {0}
2026-01-05T01:33:18.9919410Z env:
2026-01-05T01:33:18.9919668Z   pythonLocation: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:18.9920328Z   PKG_CONFIG_PATH: C:\hostedtoolcache\windows\Python\3.11.9\x64/lib/pkgconfig
2026-01-05T01:33:18.9920798Z   Python_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:18.9921221Z   Python2_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:18.9921694Z   Python3_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:33:18.9922030Z ##[endgroup]
2026-01-05T01:33:23.3300199Z Processing d:\a\aqequil\aqequil\wheelhouse\aqequil-1.0.2.dev0+g0fba86417.d20260105-cp311-cp311-win_amd64.whl
2026-01-05T01:33:23.6284006Z Collecting pandas (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.6568552Z   Downloading pandas-2.3.3-cp311-cp311-win_amd64.whl.metadata (19 kB)
2026-01-05T01:33:23.8766511Z Collecting numpy (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:23.8824047Z   Downloading numpy-2.4.0-cp311-cp311-win_amd64.whl.metadata (6.6 kB)
2026-01-05T01:33:24.0383837Z Collecting matplotlib (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.0441448Z   Downloading matplotlib-3.10.8-cp311-cp311-win_amd64.whl.metadata (52 kB)
2026-01-05T01:33:24.1173990Z Collecting plotly (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.1216608Z   Downloading plotly-6.5.0-py3-none-any.whl.metadata (8.5 kB)
2026-01-05T01:33:24.2034193Z Collecting ipython (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.2082448Z   Downloading ipython-9.8.0-py3-none-any.whl.metadata (4.5 kB)
2026-01-05T01:33:24.2504307Z Collecting chemparse (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.2558371Z   Downloading chemparse-0.3.2-py3-none-any.whl.metadata (1.7 kB)
2026-01-05T01:33:24.2912651Z Collecting dill (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.2988984Z   Downloading dill-0.4.0-py3-none-any.whl.metadata (10 kB)
2026-01-05T01:33:24.3344652Z Collecting periodictable (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.3407660Z   Downloading periodictable-2.0.2-py3-none-any.whl.metadata (5.4 kB)
2026-01-05T01:33:24.3849631Z Collecting natsort (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.3890967Z   Downloading natsort-8.4.0-py3-none-any.whl.metadata (21 kB)
2026-01-05T01:33:24.4250953Z Collecting roman (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.4316098Z   Downloading roman-5.2-py3-none-any.whl.metadata (4.3 kB)
2026-01-05T01:33:24.4933988Z Collecting ipywidgets (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.4977249Z   Downloading ipywidgets-8.1.8-py3-none-any.whl.metadata (2.4 kB)
2026-01-05T01:33:24.5347583Z Collecting wormutils (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.5427709Z   Downloading wormutils-0.2.0-py3-none-any.whl.metadata (723 bytes)
2026-01-05T01:33:24.6000826Z Collecting pychnosz (from aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.8824423Z   Downloading pychnosz-1.1.12-cp311-cp311-win_amd64.whl.metadata (8.4 kB)
2026-01-05T01:33:24.9348569Z Collecting colorama>=0.4.4 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.9391723Z   Downloading colorama-0.4.6-py2.py3-none-any.whl.metadata (17 kB)
2026-01-05T01:33:24.9899143Z Collecting decorator>=4.3.2 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:24.9944822Z   Downloading decorator-5.2.1-py3-none-any.whl.metadata (3.9 kB)
2026-01-05T01:33:25.0370142Z Collecting ipython-pygments-lexers>=1.0.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:25.0411055Z   Downloading ipython_pygments_lexers-1.1.1-py3-none-any.whl.metadata (1.1 kB)
2026-01-05T01:33:25.0851584Z Collecting jedi>=0.18.1 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:25.0894451Z   Downloading jedi-0.19.2-py2.py3-none-any.whl.metadata (22 kB)
2026-01-05T01:33:25.1275574Z Collecting matplotlib-inline>=0.1.5 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:25.1322944Z   Downloading matplotlib_inline-0.2.1-py3-none-any.whl.metadata (2.3 kB)
2026-01-05T01:33:25.1893836Z Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:25.1938818Z   Downloading prompt_toolkit-3.0.52-py3-none-any.whl.metadata (6.4 kB)
2026-01-05T01:33:25.2584819Z Collecting pygments>=2.11.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:25.2631977Z   Downloading pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
2026-01-05T01:33:25.3072962Z Collecting stack_data>=0.6.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
2026-01-05T01:33:25.3114501Z   Downloading stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
2026-01-05T01:33:25.3631447Z Collecting traitlets>=5.13.0 (from ipython->aqequil==1.0.2.dev0+g0fba86417.d20260105)
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2026-01-05T01:33:30.3428495Z Installing collected packages: pytz, pure-eval, widgetsnbextension, wcwidth, urllib3, tzdata, typing_extensions, traitlets, six, roman, pyparsing, pygments, pillow, parso, packaging, numpy, natsort, narwhals, kiwisolver, jupyterlab_widgets, importlib_resources, idna, fonttools, executing, dill, decorator, cycler, comm, colorama, chemparse, charset_normalizer, certifi, asttokens, stack_data, scipy, requests, python-dateutil, prompt_toolkit, plotly, periodictable, matplotlib-inline, jedi, ipython-pygments-lexers, contourpy, pandas, matplotlib, ipython, wormutils, pychnosz, ipywidgets, aqequil
2026-01-05T01:34:15.1042083Z 
2026-01-05T01:34:15.1078561Z Successfully installed aqequil-1.0.2.dev0+g0fba86417.d20260105 asttokens-3.0.1 certifi-2026.1.4 charset_normalizer-3.4.4 chemparse-0.3.2 colorama-0.4.6 comm-0.2.3 contourpy-1.3.3 cycler-0.12.1 decorator-5.2.1 dill-0.4.0 executing-2.2.1 fonttools-4.61.1 idna-3.11 importlib_resources-6.5.2 ipython-9.8.0 ipython-pygments-lexers-1.1.1 ipywidgets-8.1.8 jedi-0.19.2 jupyterlab_widgets-3.0.16 kiwisolver-1.4.9 matplotlib-3.10.8 matplotlib-inline-0.2.1 narwhals-2.14.0 natsort-8.4.0 numpy-2.4.0 packaging-25.0 pandas-2.3.3 parso-0.8.5 periodictable-2.0.2 pillow-12.1.0 plotly-6.5.0 prompt_toolkit-3.0.52 pure-eval-0.2.3 pychnosz-1.1.12 pygments-2.19.2 pyparsing-3.3.1 python-dateutil-2.9.0.post0 pytz-2025.2 requests-2.32.5 roman-5.2 scipy-1.16.3 six-1.17.0 stack_data-0.6.3 traitlets-5.14.3 typing_extensions-4.15.0 tzdata-2025.3 urllib3-2.6.2 wcwidth-0.2.14 widgetsnbextension-4.0.15 wormutils-0.2.0
2026-01-05T01:34:15.1717596Z 
2026-01-05T01:34:15.1718223Z [notice] A new release of pip is available: 25.1.1 -> 25.3
2026-01-05T01:34:15.1718896Z [notice] To update, run: python.exe -m pip install --upgrade pip
2026-01-05T01:34:15.4877365Z ##[group]Run cp "$GITHUB_WORKSPACE/test_integration.py" "$RUNNER_TEMP/"
2026-01-05T01:34:15.4877926Z [36;1mcp "$GITHUB_WORKSPACE/test_integration.py" "$RUNNER_TEMP/"[0m
2026-01-05T01:34:15.4878270Z [36;1mcd "$RUNNER_TEMP"[0m
2026-01-05T01:34:15.4878494Z [36;1mpython test_integration.py[0m
2026-01-05T01:34:15.4890590Z shell: C:\Program Files\Git\bin\bash.EXE --noprofile --norc -e -o pipefail {0}
2026-01-05T01:34:15.4890964Z env:
2026-01-05T01:34:15.4891205Z   pythonLocation: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:34:15.4891651Z   PKG_CONFIG_PATH: C:\hostedtoolcache\windows\Python\3.11.9\x64/lib/pkgconfig
2026-01-05T01:34:15.4892090Z   Python_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:34:15.4892466Z   Python2_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:34:15.4892839Z   Python3_ROOT_DIR: C:\hostedtoolcache\windows\Python\3.11.9\x64
2026-01-05T01:34:15.4893130Z ##[endgroup]
2026-01-05T01:34:48.8331382Z 
2026-01-05T01:34:48.8331934Z ============================================================
2026-01-05T01:34:48.8332410Z AQEQUIL INTEGRATION TEST SUITE
2026-01-05T01:34:48.8332760Z ============================================================
2026-01-05T01:34:48.8333114Z Python: 3.11.9
2026-01-05T01:34:48.8333349Z Platform: win32
2026-01-05T01:34:48.8333594Z Architecture: AMD64
2026-01-05T01:34:48.8333862Z ============================================================
2026-01-05T01:34:48.8334245Z ============================================================
2026-01-05T01:34:48.8334930Z Test 1: Checking for bundled EQ3/6 executables
2026-01-05T01:34:48.8335317Z ============================================================
2026-01-05T01:34:48.8336038Z [OK] Found bundled executables at: C:\hostedtoolcache\windows\Python\3.11.9\x64\Lib\site-packages\aqequil\bin
2026-01-05T01:34:48.8336739Z   [OK] eq3nr.exe (1.47 MB)
2026-01-05T01:34:48.8337019Z   [OK] eq6.exe (2.24 MB)
2026-01-05T01:34:48.8337313Z   [OK] eqpt.exe (1.01 MB)
2026-01-05T01:34:48.8337500Z 
2026-01-05T01:34:48.8337629Z ============================================================
2026-01-05T01:34:48.8338016Z Test 2: Testing aqequil import and basic usage
2026-01-05T01:34:48.8338408Z ============================================================
2026-01-05T01:34:48.8338812Z [OK] Successfully imported aqequil
2026-01-05T01:34:48.8339547Z [OK] Found test data at: C:\hostedtoolcache\windows\Python\3.11.9\x64\Lib\site-packages\aqequil\test_data\input_example_wrm.csv
2026-01-05T01:34:48.8340229Z 
2026-01-05T01:34:48.8340340Z ============================================================
2026-01-05T01:34:48.8340766Z Test 3: Downloading latest data0.wrm from WORM-db
2026-01-05T01:34:48.8341153Z ============================================================
2026-01-05T01:34:48.8341852Z Downloading data0.wrm from https://raw.githubusercontent.com/worm-portal/WORM-db/master/data0.wrm...
2026-01-05T01:34:48.8342567Z [OK] Downloaded data0.wrm (573.8 KB)
2026-01-05T01:34:48.8342984Z [OK] Copied data0.wrm to test_data (replaced existing)
2026-01-05T01:34:48.8343436Z [OK] Copied data0.wrm to databases (replaced existing)
2026-01-05T01:34:48.8343745Z 
2026-01-05T01:34:48.8343858Z ============================================================
2026-01-05T01:34:48.8344288Z Test 4: Testing runeqpt (data0 to data1 conversion)
2026-01-05T01:34:48.8344704Z ============================================================
2026-01-05T01:34:48.8345240Z [INFO] Working directory: C:\Users\RUNNER~1\AppData\Local\Temp\tmpbzhiu__z
2026-01-05T01:34:48.8345785Z [OK] Copied data0.wrm to working directory
2026-01-05T01:34:48.8346136Z Running EQPT on data0.wrm...
2026-01-05T01:34:48.8346409Z [OK] EQPT completed
2026-01-05T01:34:48.8346672Z [OK] data1.wrm created (0.36 MB)
2026-01-05T01:34:48.8347093Z [OK] Copied data1.wrm to bundled databases (replaced existing)
2026-01-05T01:34:48.8347435Z 
2026-01-05T01:34:48.8349671Z ============================================================
2026-01-05T01:34:48.8350166Z Test 5: Testing simple speciation (wrm database)
2026-01-05T01:34:48.8350580Z ============================================================
2026-01-05T01:34:48.8351393Z Running speciation on C:\hostedtoolcache\windows\Python\3.11.9\x64\Lib\site-packages\aqequil\test_data\input_example_wrm.csv...
2026-01-05T01:34:48.8352335Z [INFO] Working directory: C:\Users\RUNNER~1\AppData\Local\Temp\tmp90htksl8
2026-01-05T01:34:48.8352868Z [OK] Copied data0.wrm to working directory
2026-01-05T01:34:48.8353241Z Running EQPT to create data1.wrm...
2026-01-05T01:34:48.8353585Z [OK] EQPT completed, data1.wrm created
2026-01-05T01:34:48.8353964Z [OK] AqEquil instance created with wrm database
2026-01-05T01:34:48.8354883Z The input file column 'logfO2' will be used to set sample redox state. If a another column is desired, set it manually using the redox_flag parameter.
2026-01-05T01:34:48.8356080Z No 'charge_balance_on' column found in input file. Defaulting to no charge balancing for all samples.
2026-01-05T01:34:48.8357194Z Warning: no 'logfO2' column found. Attempting to find a column for aqueous O2 to estimate logfO2 at sample temperature and pressure...
2026-01-05T01:34:48.8358014Z Using wrm to speciate Bison Pool
2026-01-05T01:34:48.8358376Z Using wrm to speciate Spray Geyser Source
2026-01-05T01:34:48.8359162Z Warning: non-numeric aqueous O2 value in sample Crater Hills Geyser. Resorting to using Log fO2 (log bars) with a value of -6
2026-01-05T01:34:48.8359972Z Using wrm to speciate Crater Hills Geyser
2026-01-05T01:34:48.8361002Z Using wrm to speciate Ambergris
2026-01-05T01:34:48.8361314Z Using wrm to speciate MLS Source
2026-01-05T01:34:48.8361641Z Using wrm to speciate Gas Crack
2026-01-05T01:34:48.8361944Z Using wrm to speciate Snail
2026-01-05T01:34:48.8362211Z Finished!
2026-01-05T01:34:48.8362445Z [OK] Speciation completed
2026-01-05T01:34:48.8362773Z [OK] aq_distribution is a DataFrame with 81 rows
2026-01-05T01:34:48.8363057Z 
2026-01-05T01:34:48.8363197Z ============================================================
2026-01-05T01:34:48.8363568Z Test 6: Testing water-rock reaction
2026-01-05T01:34:48.8363925Z ============================================================
2026-01-05T01:34:48.8364713Z Running speciation on C:\hostedtoolcache\windows\Python\3.11.9\x64\Lib\site-packages\aqequil\test_data\input_example_wrm.csv...
2026-01-05T01:34:48.8365684Z [INFO] Working directory: C:\Users\RUNNER~1\AppData\Local\Temp\tmpmh6w3j5n
2026-01-05T01:34:48.8366341Z [OK] Copied wrm_data_latest.csv to bundled databases (replaced existing)
2026-01-05T01:34:48.8366969Z [OK] Copied elements.csv to bundled databases (replaced existing)
2026-01-05T01:34:48.8367660Z [OK] Copied solid_solutions.csv to bundled databases (replaced existing)
2026-01-05T01:34:48.8368333Z [OK] Copied wrm_data_logk.csv to bundled databases (replaced existing)
2026-01-05T01:34:48.8368924Z [OK] Copied wrm_data_logk_s.csv to bundled databases (replaced existing)
2026-01-05T01:34:48.8369931Z The input file column 'logfO2' will be used to set sample redox state. If a another column is desired, set it manually using the redox_flag parameter.
2026-01-05T01:34:48.8370910Z Getting wrm_data_latest.csv ready. This will take a moment...
2026-01-05T01:34:48.8371635Z No 'charge_balance_on' column found in input file. Defaulting to no charge balancing for all samples.
2026-01-05T01:34:48.8372618Z Warning: a column for Pressure was not found in the sample input file. Defaulting to water saturation pressure...
2026-01-05T01:34:48.8373792Z Warning: no 'logfO2' column found. Attempting to find a column for aqueous O2 to estimate logfO2 at sample temperature and pressure...
2026-01-05T01:34:48.8374660Z Using wrm_data_latest.csv to speciate Bison Pool
2026-01-05T01:34:48.8375132Z Using wrm_data_latest.csv to speciate Spray Geyser Source
2026-01-05T01:34:48.8375995Z Warning: non-numeric aqueous O2 value in sample Crater Hills Geyser. Resorting to using Log fO2 (log bars) with a value of -6
2026-01-05T01:34:48.8377421Z Using wrm_data_latest.csv to speciate Crater Hills Geyser
2026-01-05T01:34:48.8377932Z Using wrm_data_latest.csv to speciate Ambergris
2026-01-05T01:34:48.8378355Z Using wrm_data_latest.csv to speciate MLS Source
2026-01-05T01:34:48.8378778Z Using wrm_data_latest.csv to speciate Gas Crack
2026-01-05T01:34:48.8379389Z Using wrm_data_latest.csv to speciate Snail
2026-01-05T01:34:48.8379731Z Finished!
2026-01-05T01:34:48.8379959Z [OK] Initial speciation completed
2026-01-05T01:34:48.8380286Z [OK] Reaction prepared
2026-01-05T01:34:48.8380576Z Running water-rock reaction...
2026-01-05T01:34:48.8380925Z Using wrm_data_latest.csv to react Bison.Pool
2026-01-05T01:34:48.8381212Z 
2026-01-05T01:34:48.8381428Z The sample 'Bison Pool' experienced errors during the reaction:
2026-01-05T01:34:48.8382009Z  * Error - (EQ6/intmtb) A mass balance is defined on the input
2026-01-05T01:34:48.8382551Z        file for NH4+ (Aqueous solution), but this species isn't in the
2026-01-05T01:34:48.8383165Z        currently active basis set. Either it isn't on the current data file
2026-01-05T01:34:48.8383772Z        or it has been suppressed as by an nxmod or iopt(15) option.
2026-01-05T01:34:48.8384115Z 
2026-01-05T01:34:48.8384605Z Mass transfer results for sample 'Bison Pool' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:48.8385262Z 
2026-01-05T01:34:48.8385439Z Using wrm_data_latest.csv to react Spray.Geyser.Source
2026-01-05T01:34:48.8385768Z 
2026-01-05T01:34:48.8386021Z The sample 'Spray Geyser Source' experienced errors during the reaction:
2026-01-05T01:34:48.8386745Z  * Error - (EQ6/intrct) The reactant antigorite isn't among
2026-01-05T01:34:48.8387163Z        the loaded minerals.
2026-01-05T01:34:48.8387349Z 
2026-01-05T01:34:48.8387897Z Mass transfer results for sample 'Spray Geyser Source' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:48.8388621Z 
2026-01-05T01:34:48.8388811Z Using wrm_data_latest.csv to react Crater.Hills.Geyser
2026-01-05T01:34:48.8389286Z Using wrm_data_latest.csv to react Ambergris
2026-01-05T01:34:48.8389688Z Using wrm_data_latest.csv to react MLS.Source
2026-01-05T01:34:48.8390068Z Using wrm_data_latest.csv to react Gas.Crack
2026-01-05T01:34:48.8390330Z 
2026-01-05T01:34:48.8390532Z The sample 'Gas Crack' experienced errors during the reaction:
2026-01-05T01:34:48.8391115Z  * Error - (EQ6/path) The equilibrium calculation failed at the initial value
2026-01-05T01:34:48.8391615Z        of reaction progress.
2026-01-05T01:34:48.8391817Z 
2026-01-05T01:34:48.8392286Z Mass transfer results for sample 'Gas Crack' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:48.8392938Z 
2026-01-05T01:34:48.8393053Z Using wrm_data_latest.csv to react Snail
2026-01-05T01:34:48.8393297Z 
2026-01-05T01:34:48.8393496Z The sample 'Snail' experienced errors during the reaction:
2026-01-05T01:34:48.8394061Z  * Error - (EQ6/path) The equilibrium calculation failed at the initial value
2026-01-05T01:34:48.8394567Z        of reaction progress.
2026-01-05T01:34:48.8394762Z 
2026-01-05T01:34:48.8395217Z Mass transfer results for sample 'Snail' could not be saved because the calculation did not finish due to error(s).
2026-01-05T01:34:48.8395827Z 
2026-01-05T01:34:48.8395931Z [OK] Reaction completed
2026-01-05T01:34:48.8396221Z [OK] misc_params is a DataFrame with 12 rows
2026-01-05T01:34:48.8396490Z 
2026-01-05T01:34:48.8396625Z ============================================================
2026-01-05T01:34:48.8397045Z TEST SUMMARY
2026-01-05T01:34:48.8397292Z ============================================================
2026-01-05T01:34:48.8397647Z [PASS] Bundled Executables
2026-01-05T01:34:48.8397934Z [PASS] Import and Basic Usage
2026-01-05T01:34:48.8398237Z [PASS] Download Latest data0.wrm
2026-01-05T01:34:48.8398547Z [PASS] EQPT Data0 to Data1 Conversion
2026-01-05T01:34:48.8398898Z [PASS] Simple Speciation (wrm database)
2026-01-05T01:34:48.8399353Z [PASS] Water-Rock Reaction
2026-01-05T01:34:48.8399646Z ============================================================
2026-01-05T01:34:48.8399906Z 
2026-01-05T01:34:48.8400003Z [PASS] All tests passed!
2026-01-05T01:34:49.0661949Z Post job cleanup.
2026-01-05T01:34:49.2857125Z Post job cleanup.
2026-01-05T01:34:49.5038083Z [command]"C:\Program Files\Git\bin\git.exe" version
2026-01-05T01:34:49.5271133Z git version 2.50.0.windows.1
2026-01-05T01:34:49.5354920Z Temporarily overriding HOME='D:\a\_temp\5090053e-d46e-4dfb-8e74-94dfd6d2854a' before making global git config changes
2026-01-05T01:34:49.5355852Z Adding repository directory to the temporary git global config as a safe directory
2026-01-05T01:34:49.5380986Z [command]"C:\Program Files\Git\bin\git.exe" config --global --add safe.directory D:\a\aqequil\aqequil
2026-01-05T01:34:49.5717993Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp core\.sshCommand
2026-01-05T01:34:49.6007264Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :\""
2026-01-05T01:34:50.0418134Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2026-01-05T01:34:50.0623127Z http.https://github.com/.extraheader
2026-01-05T01:34:50.0675773Z [command]"C:\Program Files\Git\bin\git.exe" config --local --unset-all http.https://github.com/.extraheader
2026-01-05T01:34:50.0930451Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "sh -c \"git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :\""
2026-01-05T01:34:50.5131875Z [command]"C:\Program Files\Git\bin\git.exe" config --local --name-only --get-regexp ^includeIf\.gitdir:
2026-01-05T01:34:50.5385275Z [command]"C:\Program Files\Git\bin\git.exe" submodule foreach --recursive "git config --local --show-origin --name-only --get-regexp remote.origin.url"
2026-01-05T01:34:50.9639423Z Cleaning up orphan processes
